At home: .357 Magnum Ruger Security Six engraved "Made in the Bicentennial Year of U.S.A." I just realized is gonna be 40 years old!
Smith & Wesson M&P 15 Sport AR-15.
9mm Taurus Millennium (wife's), .22LR rimfire Remington 897 (son's).

Work issued: .40 caliber H&K P2000.

Merry Christmas everyone from the Space Coast of Florida where it is 81 degrees, sunny and humid! Hard to believe it is Christmas day, even by Florida standards!

On our way to a 80+ day, so a virtual fire is all I can enjoy while puttering around the shop.

Where are you located?

Also, do you know what exhaust you have? I dont see any MSM compatible models on RB's website: http://www.racingbeat.com/Miata-1990-2005/Exhaust-99-05-Miata.html

That is a new piece.  The original piece is welded on to the slide.  The new piece has a nut welded to the back to receive the standard seat belt attachment bolt.

Welcome.
I also bought mine at Houston.  Live in San Antonio and work at Corpus Christi.

See past Miatas: LO MSM and 94 m edition in my Gallery (Javier's Garage).
My wife NC and my MSM with 6ULs.
 

Well I tore it all down to the timing, turns out my exhaust cam gear I had not double checked the alignment with the little nub and my marking.  Turned  it into the correct alignment, replaced the timing crank pulley, re-did the timing, put it all back together along with the new riming plate. 

She was pretty well flooded, holding down WOT for a good tens seconds before she finally caughta good stroke(engine running but starter not enguaged)

Have to say its an accomplishment even with a rookie mistake here and there, is to be expected with such a big teardown.  Now shes good for atleast another 60k, kevlar timing belt and a gates WP.

Did you reuse the original triangular plate to mount the seat belt buckle or is that a new piece as well? 

If your using a aftermarket MBC with 2 connections there is no third hose to use.  The OEM EBC gets removed the the hoses get plugged if they are still in the mix.  You run a line from the output side of the turbo to the input of the MBC and the output of the MBC connects to the wastegate can.

You need the third hose involved somewhere in the mix from the 'pressurised' side of the intake pathway. ie. between the turbo and the throttle body.

There is normally a hose from the pressurised side to the wastegate with a T-junction that feeds off towards factory EBC and then to the intake pipe (pre-turbo). When you replace the factory EBC with an aftermarket unit it's normally just positioned into the same place.

It sounds like in your setup, with the addition of the AEM intake, the 'pressurised' pipe has gone missing from the mix.